PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0051s00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 593aa    MW: 66492.5 Da    PI: 9.5808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0051s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-08500549147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
  Vang0051s00080.1 500 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 549
                       567888999**********************99**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.674495554IPR017930Myb domain
SMARTSM007171.6E-7499552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10500550IPR009057Homeodomain-like
CDDcd116601.23E-16501551No hitNo description
SuperFamilySSF466891.11E-15501582IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MMLQKKVNYG FNGYKGPAIP KASRSIRGRG TIKKKPENNQ IQAFEILANV AGNFLQESEN  60
SGLDNVASAK DPHTFSSADM KDKLEDERGS FKKDPCEHGN CSEIVSACVP SRQGKHENLR  120
VMDSSSFPGN HLEGQGQNIL EREDERGKRR RVNEKSTHIK GCFEGLIEPS CKVSKDCSSE  180
NNVAKSSLEG HRHIDSFPNT SSGRKLGRDD DENLVNSTQL NSRDKIYSTP PDMHKLKYAS  240
SLMSDENNSR DNSELENLQR MYPFKKRKFF NQTSSSTSDR GSQCQGTFDS SDTTRVNDTN  300
HAIEESSSIV GQQVHSGSKG CNGLNEFHFY LTVKLSIKSF KVPELFINIP ETATIGSLKG  360
KKVRDDSKTL IQTGISQDEK RHRLGFMLEP RHTSNSPSSC NDNPCFLTTG SQQKLSKQST  420
SLMLQQGTYN VSQERSRIKI ESCVEGDLNV VSSQPDTYAN NNVAKCRTLV AVPAINMEAL  480
AVVPFRRKSG NPDFAQRRIR RPFSVLEVEA LVQAVEKLGT GRWRDVKQRA FDHAKHRTYV  540
DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLAAHAYW SQQQCKHQLK PL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-524845921109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151KRRRV
2258267QRMYPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140327.10.0hypothetical protein PHAVU_008G1030000g, partial
TrEMBLV7B7670.0V7B767_PHAVU; Uncharacterized protein (Fragment)
STRINGGLYMA07G15940.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-76TRF-like 2